ATCC® TSD-485™ | Rhodanobacter montanensis

Overview

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Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	4,231,019 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (0 Circularized)
N50	4,010,099 nt
%GC	62.93%

Organism Summary
Name	ATCC® TSD-485™
Tags

Annotations Summary
Number of CDS	3715
Number of Hypothetical Proteins	448
Number of tRNA	50
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	50,899
Oxford Nanopore Median Q Score	42
Illumina Read Count	4,031,714
Illumina Mean Coverage Depth	240.16×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,031,714

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.04%

Assembly Quality Control

Metrics assessing the assembly quality

2 out of 3 passed, 1 failed

FailedEstimated genome completeness78.58%

PassedEstimated genome contamination8.15%

PassedAverage depth of coverage240.16×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.

Rhodanobacter montanensis (ATCC® TSD-485™)