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  • Vibrio campbellii

Vibrio campbellii (ATCC® BAA-2363™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 31, 2022
Length6,071,988 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N505,982,980 nt
%GC45.43%
Organism Summary
NameATCC® BAA-2363™
GenotypeDepositor-provided information: luxS- luxM- luxA+
IsolationMutant of strain BB120 (ATCC BAA-1116), an ocean isolate
Biosafety Level1
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS5,598
Number of Hypothetical Proteins2,481
Number of tRNA131
Number of 5s rRNA13
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count1,130,206
Oxford Nanopore Median Q Score23
Illumina Read Count18,758,980
Illumina Mean Coverage Depth427.06×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads18,758,980
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.73%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage427.06×
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