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- Leptospira interrogans
- Leptospira interrogans serovar Copenhageni
Leptospira interrogans serovar Copenhageni (ATCC® BAA-1198™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 4,691,425 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,279,907 nt |
| %GC | 35.43% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-1198™ |
| Isolation | Patient with leptospirosis; isolated by A Ko |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,783 |
| Number of Hypothetical Proteins | 992 |
| Number of tRNA | 40 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 279,343 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,302,321 |
| Illumina Mean Coverage Depth | 181.995× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,302,321
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness96.47%
PassedEstimated genome contamination0%
PassedAverage depth of coverage181.995×
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