ATCC® 56851™ | Saprolegnia diclina

Overview

Annotations

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® 56851™
Type Strain	No

Assembly Summary
Date Published	June 11, 2025
Length	51,470,445 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	79 (0 Circularized)
N50	1,125,034 nt
%GC	58.38%

Annotations Summary
Number of BUSCO Annotations	414

Input Reads Summary
Oxford Nanopore Read Count	1,155,747
Oxford Nanopore Median Q Score	35
Illumina Read Count	133,906,704
Illumina Mean Coverage Depth	375.163×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Microbes

0 out of 0 selected (Select All / Deselect All).

		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

Displaying Product

Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	133,906,704
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

BUSCO Quality Control Metrics
Estimated genome completeness	54.6%
Average depth of coverage	375.163×

This fungus was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions