ATCC® VR-1356™ | Chlamydia pneumoniae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	1,224,650 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	1,223,369 nt
%GC	40.54%

Organism Summary
Name	ATCC® VR-1356™
Isolation	Nasopharynx of human patient with pneumonia
Tags
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	1051
Number of Hypothetical Proteins	210
Number of tRNA	38
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	192,081
Oxford Nanopore Median Q Score	27
Illumina Read Count	9,980,252
Illumina Mean Coverage Depth	170.426×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,980,252

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.01%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.49%

PassedEstimated genome contamination0.3%

PassedAverage depth of coverage170.426×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia pneumoniae (ATCC® VR-1356™)