Organism Summary | |
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Catalog Number | ATCC® 51630™ |
Strain Alias | MIT Hb1 |
Isolation | CBA/CA mouse bile |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | December 15, 2021 |
Length | 2,565,106 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 2,563,610 nt |
%GC | 34.74% |
Annotations Summary | |
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Number of CDS | 2471 |
Number of Hypothetical Proteins | 814 |
Number of tRNA | 38 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 94,841 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 19,961,327 |
Illumina Mean Coverage Depth | 1,070.024× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 19,961,327 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 96.82% |
Estimated genome contamination | 0.52% |
Average depth of coverage | 1,070.024× |