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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 25, 2023 |
| Length | 5,491,765 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 5,430,029 nt |
| %GC | 61.39% |
| Organism Summary | |
|---|---|
| Name | ATCC® 11996™ |
| Strain Name | [567201, FHP 1343, NCIB 8955, NCPPB 1969, NCTC 10698, NRRL B-2611, R.Y. Stanier 78, RH 1104] |
| Isolation | Soil |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4911 |
| Number of Hypothetical Proteins | 503 |
| Number of tRNA | 103 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 27,421 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 12,402,417 |
| Illumina Mean Coverage Depth | 298.876× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads12,402,417
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.85%
PassedEstimated genome contamination0.46%
PassedAverage depth of coverage298.876×
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