As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Salmonella enterica
- Salmonella enterica subsp. indica
Salmonella enterica subsp. indica (ATCC® 43976™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 28, 2023 |
| Length | 4,880,145 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 4,750,055 nt |
| %GC | 51.59% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43976™ |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,652 |
| Number of Hypothetical Proteins | 270 |
| Number of tRNA | 87 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 126,683 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 8,420,081 |
| Illumina Mean Coverage Depth | 216.396× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,420,081
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.2%
PassedAverage depth of coverage216.396×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline