Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
- Orthobunyavirus cacheense
- Cache Valley virus
Cache Valley virus (ATCC® VR-298™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 3, 2023 |
| Length | 12,272 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 4 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 6,281 nt |
| %GC | 35.5% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-298™ |
| Isolation | Mosquitoes (Culiseta inornata) |
| Tags | |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,887,104 |
| Illumina Mean Coverage Depth | 228.348× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline