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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 33202™ |
| Strain Alias | GA 77-52 [CDC 1976-78, DSM 13697] |
| Isolation | Channel catfish, Ictalurus punctatus |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 3,833,089 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (1 Circularized) |
| N50 | 3,824,494 nt |
| %GC | 57.41% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3489 |
| Number of Hypothetical Proteins | 246 |
| Number of tRNA | 98 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 42,361 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,630,443 |
| Illumina Mean Coverage Depth | 328.613× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 9,630,443 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.25% |
| Estimated genome contamination | 0.45% |
| Illumina depth of coverage | 328.613× |
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