Assembly Summary | |
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Date Published | September 13, 2024 |
Length | 2,330,955 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (0 Circularized) |
Assembly Level | Chromosome |
N50 | 2,273,211 nt |
%GC | 55.85% |
Organism Summary | |
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Name | ATCC® 25085™ |
Isolation | Pig gut |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Annotations Summary | |
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Number of CDS | 2,113 |
Number of Hypothetical Proteins | 223 |
Number of tRNA | 58 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 416,510 |
Oxford Nanopore Median Q Score | 30 |
Illumina Read Count | 18,146,904 |
Illumina Mean Coverage Depth | 1,147.315× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions