ATCC® BAA-850™ | Mycobacterium senegalense

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 1, 2024
Length	6,169,825 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (0 Circularized)
N50	1,667,552 nt
%GC	66.56%

Organism Summary
Name	ATCC® BAA-850™
Isolation	Clinical specimen; isolated September 13, 1999
Tags	Methylation Data
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	5810
Number of Hypothetical Proteins	722
Number of tRNA	49
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	167,351
Oxford Nanopore Median Q Score	27
Illumina Read Count	12,789,678
Illumina Mean Coverage Depth	307.305×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads12,789,678

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.87%

PassedEstimated genome contamination0.38%

PassedAverage depth of coverage307.305×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Mycobacterium senegalense (ATCC® BAA-850™)