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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 700724™ |
| Strain Alias | 35000HP |
| Isolation | Skin from upper arm of experimentally infected subject |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 27, 2019 |
| Length | 1,698,380 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 1,698,380 nt |
| %GC | 38.21% |
| Annotations Summary | |
|---|---|
| Number of CDS | 1623 |
| Number of Hypothetical Proteins | 151 |
| Number of tRNA | 50 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 374,238 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 5,679,355 |
| Illumina Mean Coverage Depth | 713.489× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 5,679,355 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 96.37% |
| Estimated genome contamination | 1% |
| Illumina depth of coverage | 713.489× |
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