Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 12041™ |
| Strain Name | CDC A-193 |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 5,088,391 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 5,016,978 nt |
| %GC | 50.87% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4954 |
| Number of Hypothetical Proteins | 223 |
| Number of tRNA | 95 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 25,245 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 10,117,103 |
| Illumina Mean Coverage Depth | 270.38× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads10,117,103
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.97%
Estimated genome contamination0.42%
Average depth of coverage270.38×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline