Organism Summary | |
---|---|
Catalog Number | ATCC® BAA-824™ |
Strain Alias | gM-1 [CIP 105776] |
Isolation | Clinical specimen |
Tags | Methylation DataType Strain |
Biosafety Level | 3 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | September 2, 2021 |
Length | 4,354,869 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (0 Circularized) |
N50 | 2,441,037 nt |
%GC | 65.65% |
Annotations Summary | |
---|---|
Number of CDS | 4040 |
Number of Hypothetical Proteins | 427 |
Number of tRNA | 45 |
Number of 5s rRNA | 1 |
Number of 16s rRNA | 1 |
Number of 23s rRNA | 1 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 385,906 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 7,825,603 |
Illumina Mean Coverage Depth | 169.392× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 7,825,603 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.78% |
Estimated genome contamination | 0% |
Average depth of coverage | 169.392× |