ATCC® BAA-1877™ | Borrelia americana | ATCC Genome Portal

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1877™
Strain Alias	SCW41; subgroup A
Isolation	Hard tick, Ixodes minor; isolated May 1995
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2020
Length	1,184,366 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	17 (3 Circularized)
N50	904,108 nt
%GC	27.82%

Annotations Summary
Number of CDS	1117
Number of Hypothetical Proteins	203
Number of tRNA	32
Number of 5s rRNA	2
Number of 16s rRNA	1
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	210,091
Oxford Nanopore Median Q Score	28
Illumina Read Count	14,070,603
Illumina Mean Coverage Depth	1,575.172×
Illumina Median Q Score	34

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	14,070,603
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control

Assembly Quality Control Metrics
Estimated genome completeness	100%
Estimated genome contamination	0%
Illumina depth of coverage	1,575.172×