ATCC® BAA-111™ | Arthrobacter methylotrophus

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-111™
Strain Alias	TGA [DSM 14008]
Isolation	Soil from the root system of Tagetes minuta
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	February 1, 2024
Length	4,839,719 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (0 Circularized)
N50	2,615,135 nt
%GC	63.06%

Annotations Summary
Number of CDS	4650
Number of Hypothetical Proteins	927
Number of tRNA	92
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	660,100
Oxford Nanopore Median Q Score	26
Illumina Read Count	10,826,274
Illumina Mean Coverage Depth	329.601×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,826,274
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.62%
Estimated genome contamination	0.49%
Illumina depth of coverage	329.601×
ONT depth of coverage	919.81×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions