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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 11778™ |
| Strain Alias | FDA strain PCI 213 [ATCC 9634, NCTC 10320, S.A. Waksman strain O] |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 5,007,731 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| N50 | 5,007,731 nt |
| %GC | 35.33% |
Annotations Summary | |
|---|---|
| Number of CDS | 5010 |
| Number of Hypothetical Proteins | 438 |
| Number of tRNA | 97 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 13 |
| Number of 23s rRNA | 13 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 21,647 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 5,213,746 |
| Illumina Mean Coverage Depth | 250.451× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 5,213,746 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 96.91% |
| Estimated genome contamination | 0.09% |
| Illumina depth of coverage | 250.451× |
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