| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 17678™ | 
| Strain Alias | 312 [R-122] | 
| Isolation | Blood culture | 
| Tags | Methylation Data | 
| Biosafety Level | 1 | 
| Type Strain | No | 
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 | 
| Length | 4,941,017 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 12 (0 Circularized) | 
| N50 | 2,655,767 nt | 
| %GC | 66.59% | 
| Annotations Summary | |
|---|---|
| Number of CDS | 4433 | 
| Number of Hypothetical Proteins | 663 | 
| Number of tRNA | 74 | 
| Number of 5s rRNA | 5 | 
| Number of 16s rRNA | 4 | 
| Number of 23s rRNA | 4 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 78,029 | 
| Oxford Nanopore Median Q Score | 42 | 
| Illumina Read Count | 4,228,922 | 
| Illumina Mean Coverage Depth | 211.296× | 
| Illumina Median Q Score | 40 | 
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,228,922 | 
| Median Q score, all bases | 40 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.48% | 
| Estimated genome contamination | 2.53% | 
| Illumina depth of coverage | 211.296× | 
| ONT depth of coverage | 51.642× | 
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions