Organism Summary | |
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Catalog Number | ATCC® 17678™ |
Strain Alias | 312 [R-122] |
Isolation | Blood culture |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | June 10, 2025 |
Length | 4,941,017 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 12 (0 Circularized) |
N50 | 2,655,767 nt |
%GC | 66.59% |
Annotations Summary | |
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Number of CDS | 4433 |
Number of Hypothetical Proteins | 663 |
Number of tRNA | 74 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 78,029 |
Oxford Nanopore Median Q Score | 42 |
Illumina Read Count | 4,228,922 |
Illumina Mean Coverage Depth | 211.296× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 4,228,922 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 97.48% |
Estimated genome contamination | 2.53% |
Average depth of coverage | 211.296× |
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions