ATCC® BAA-806™ | Herbaspirillum huttiense subsp. putei

Overview

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Quality Control

Assembly Summary
Date Published	October 30, 2024
Length	5,826,043 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	5,826,043 nt
%GC	62.33%

Annotations Summary
Number of CDS	5225
Number of Hypothetical Proteins	611
Number of tRNA	59
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	210,873
Oxford Nanopore Median Q Score	34
Illumina Read Count	16,855,888
Illumina Mean Coverage Depth	424.527×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	16,855,888
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.87%
Estimated genome contamination	0.2%
Illumina depth of coverage	424.527×
ONT depth of coverage	146.178×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions