ATCC® 14629™ | Nocardia otitidiscaviarum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 14629™
Strain Alias	[IFO 14405, NCTC 1934]
Isolation	Infected middle ear of guinea pig
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	February 1, 2024
Length	7,514,422 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	8 (3 Circularized)
N50	1,676,902 nt
%GC	69.01%

Annotations Summary
Number of CDS	6820
Number of Hypothetical Proteins	1113
Number of tRNA	70
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	211,704
Oxford Nanopore Median Q Score	26
Illumina Read Count	12,252,236
Illumina Mean Coverage Depth	240.478×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control
Number of trimmed reads	12,252,236
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	97.05%
Estimated genome contamination	3.98%
Illumina depth of coverage	240.478×
ONT depth of coverage	207.48×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions