As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 23,006,770 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 18 |
| Assembly Level | Scaffold |
| N50 | 1,911,166 nt |
| %GC | 47.35% |
| Organism Summary | |
|---|---|
| Name | ATCC® 28188™ |
| Isolation | Lesion |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 754 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 250,321 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 59,355,012 |
| Illumina Mean Coverage Depth | 326.009× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads59,355,012
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness98.68%
PassedAverage depth of coverage326.009×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline