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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 32857™ |
| Strain Alias | CBS 2591 [CCRC 22112] |
| Isolation | Acarapis woodi from bee trachea |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | September 16, 2025 |
| Length | 9,384,167 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 14 (0 Circularized) |
| N50 | 1,406,062 nt |
| %GC | 31.02% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 512 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 507,508 |
| Oxford Nanopore Median Q Score | 36 |
| Illumina Read Count | 20,031,260 |
| Illumina Mean Coverage Depth | 269.97× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 20,031,260 |
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 67.5% |
| Average depth of coverage | 269.97× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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