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- Pestivirus bovis
- Bovine viral diarrhea virus 1
Bovine viral diarrhea virus 1 (ATCC® VR-534™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 12,277 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 2 |
| Assembly Level | Complete |
| N50 | 7,279 nt |
| %GC | 45.65% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-534™ |
| Isolation | Spleen of a naturally occurring fatal case of BVD in the closed herd at National Animal Disease Laboratory. |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 3,970,010 |
| Illumina Mean Coverage Depth | 710.37× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
Notes
This virus was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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