ATCC® MYA-4855™ | Pseudogymnoascus destructans

Overview

Annotations

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® MYA-4855™
Strain Alias	20631-21
Isolation	Wing skin of little brown bat, Myotis lucifugus, from Williams Hotel Mine in Ulster County; isolated February 2008
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	December 22, 2020
Length	35,058,565 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	28 (0 Circularized)
N50	1,896,452 nt
%GC	49.35%

Annotations Summary
Number of BUSCO Annotations	1112

Input Reads Summary
Oxford Nanopore Read Count	617,383
Oxford Nanopore Median Q Score	13.9
Illumina Read Count	60,429,130
Illumina Mean Coverage Depth	241.943×
Illumina Median Q Score	37

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	60,429,130
Median Q score, all bases	37
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

BUSCO Quality Control Metrics
Estimated genome completeness	99.1%
Average depth of coverage	241.943×

This fungus was assembled, annotated, and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions