ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Acidiphilium
  • Acidiphilium cryptum

Acidiphilium cryptum (ATCC® 33463™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 25, 2023
Length4,356,501 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (4 Circularized)
Assembly LevelChromosome
N503,346,444 nt
%GC67.02%
Organism Summary
NameATCC® 33463™
IsolationCultures of Thiobacillus ferrooxidans
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,007
Number of Hypothetical Proteins1,767
Number of tRNA93
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count189,506
Oxford Nanopore Median Q Score23
Illumina Read Count9,260,319
Illumina Mean Coverage Depth280.071×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads9,260,319
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.99%
PassedAverage depth of coverage280.071×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline