ATCC® BAA-2935™ | Streptomyces sp.

Overview

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Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	7,530,155 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	8 (1 Circularized)
Assembly Level	Chromosome
N50	1,521,016 nt
%GC	71.4%

Organism Summary
Name	ATCC® BAA-2935™
Isolation	Blood
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Annotations Summary
Number of CDS	6,756
Number of Hypothetical Proteins	1,024
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	104,444
Oxford Nanopore Median Q Score	31
Illumina Read Count	9,945,068
Illumina Mean Coverage Depth	189.717×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,945,068

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.89%

PassedEstimated genome contamination0.57%

PassedAverage depth of coverage189.717×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptomyces sp. (ATCC® BAA-2935™)