Organism Summary | |
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Catalog Number | ATCC® 33566™ |
Strain Alias | 78181 [ICMP 7221, PDDCC 7221] |
Isolation | Winter wheat, Triticum aestivum |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | August 8, 2023 |
Length | 3,338,246 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (1 Circularized) |
N50 | 3,277,163 nt |
%GC | 73.69% |
Annotations Summary | |
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Number of CDS | 3121 |
Number of Hypothetical Proteins | 466 |
Number of tRNA | 45 |
Number of 5s rRNA | 2 |
Number of 16s rRNA | 2 |
Number of 23s rRNA | 2 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 69,528 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 9,389,460 |
Illumina Mean Coverage Depth | 363.261× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,389,460 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.49% |
Estimated genome contamination | 1.87% |
Average depth of coverage | 363.261× |