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- Clavibacter michiganensis
- Clavibacter michiganensis subsp. tessellarius
Clavibacter michiganensis subsp. tessellarius (ATCC® 33566™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 8, 2023 |
| Length | 3,338,246 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 3,277,163 nt |
| %GC | 73.69% |
| Organism Summary | |
|---|---|
| Name | ATCC® 33566™ |
| Isolation | Winter wheat, Triticum aestivum |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,125 |
| Number of Hypothetical Proteins | 481 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 69,528 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 9,389,460 |
| Illumina Mean Coverage Depth | 363.261× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,389,460
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.49%
PassedEstimated genome contamination1.87%
PassedAverage depth of coverage363.261×
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