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  • Acidiphilium
  • Acidiphilium angustum

Acidiphilium angustum (ATCC® 35903™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 8, 2023
Length4,420,478 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs21 (2 Circularized)
Assembly LevelChromosome
N50906,119 nt
%GC63.5%
Organism Summary
NameATCC® 35903™
IsolationAcidic
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,064
Number of Hypothetical Proteins1,972
Number of tRNA53
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count54,331
Oxford Nanopore Median Q Score24
Illumina Read Count10,390,798
Illumina Mean Coverage Depth315.993×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads10,390,798
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.5%
PassedEstimated genome contamination0.25%
PassedAverage depth of coverage315.993×
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