ATCC® BAA-1400™ | Mycobacterium arosiae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1400™
Strain Alias	T1920
Isolation	Bone marrow; isolated October 30, 2002
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	October 31, 2023
Length	6,060,021 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	8 (0 Circularized)
N50	2,512,779 nt
%GC	66.82%

Annotations Summary
Number of CDS	5664
Number of Hypothetical Proteins	740
Number of tRNA	49
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	120,856
Oxford Nanopore Median Q Score	27
Illumina Read Count	14,256,162
Illumina Mean Coverage Depth	348.626×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	14,256,162
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.94%
Estimated genome contamination	1.32%
Illumina depth of coverage	348.626×
ONT depth of coverage	143.487×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions