ATCC® BAA-1400™ | Mycobacterium arosiense

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 31, 2023
Length	6,060,021 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	8 (0 Circularized)
Assembly Level	Chromosome
N50	2,512,779 nt
%GC	66.82%

Organism Summary
Name	ATCC® BAA-1400™
Isolation	Bone marrow; isolated October 30, 2002
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	5,660
Number of Hypothetical Proteins	771
Number of tRNA	49
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	120,856
Oxford Nanopore Median Q Score	27
Illumina Read Count	14,256,162
Illumina Mean Coverage Depth	348.626×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads14,256,162

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.94%

PassedEstimated genome contamination1.32%

PassedAverage depth of coverage348.626×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Mycobacterium arosiense (ATCC® BAA-1400™)