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- Severe acute respiratory syndrome-related coronavirus
- Severe acute respiratory syndrome coronavirus 2
Severe acute respiratory syndrome coronavirus 2 (ATCC® VR-1992™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 30, 2020 |
| Length | 29,927 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 29,927 nt |
| %GC | 37.98% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1992™ |
| Isolation | Derived from 2019-nCoV/Italy-INMI1, which was originally isolated from sputum of a patient with a respiratory illness who had recently returned from travel to the affected region of China and developed clinical disease (COVID-19) in January 2020 in Rome, Italy. This item has 4 sequence variants (3 with single nucleotide polymorphisms and one 30 nucleotide deletion in the Spike CDS region) compared to the original clinical isolate sequence. |
| Tags | |
| Biosafety Level | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,499,346 |
| Illumina Mean Coverage Depth | 1,738.255× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
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