Organism Summary | |
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Catalog Number | ATCC® VR-1992™ |
Isolation | Derived from 2019-nCoV/Italy-INMI1, which was originally isolated from sputum of a patient with a respiratory illness who had recently returned from travel to the affected region of China and developed clinical disease (COVID-19) in January 2020 in Rome, Italy. This item has 4 sequence variants (3 with single nucleotide polymorphisms and one 30 nucleotide deletion in the Spike CDS region) compared to the original clinical isolate sequence. |
Biosafety Level | 3 |
Assembly Summary | |
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Date Published | June 30, 2020 |
Length | 29,927 nt |
Sequencing Technology | Illumina |
Number of Contigs | 1 (0 Circularized) |
Assembly Level | Complete |
N50 | 29,927 nt |
%GC | 37.98% |
Input Reads Summary | |
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Oxford Nanopore Read Count | 0 |
Oxford Nanopore Median Q Score | 0 |
Illumina Read Count | 2,499,346 |
Illumina Mean Coverage Depth | 1,738.255× |
Illumina Median Q Score | 38 |
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |