ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Severe acute respiratory syndrome-related coronavirus
  • Severe acute respiratory syndrome coronavirus 2

Severe acute respiratory syndrome coronavirus 2 (ATCC® VR-1992™)

Overview
Related Genomes
Quality Control
Assembly Summary
Date PublishedJune 30, 2020
Length29,927 nt
Sequencing TechnologyIllumina
Number of Segments1
Assembly LevelComplete
N5029,927 nt
%GC37.98%
Organism Summary
NameATCC® VR-1992™
IsolationDerived from 2019-nCoV/Italy-INMI1, which was originally isolated from sputum of a patient with a respiratory illness who had recently returned from travel to the affected region of China and developed clinical disease (COVID-19) in January 2020 in Rome, Italy. This item has 4 sequence variants (3 with single nucleotide polymorphisms and one 30 nucleotide deletion in the Spike CDS region) compared to the original clinical isolate sequence.
Biosafety Level3
Input Reads Summary
Illumina Read Count2,499,346
Illumina Mean Coverage Depth1,738.255×
Illumina Median Q Score38

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
3/3
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline