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- Orthoflavivirus japonicum
- Japanese encephalitis virus
Japanese encephalitis virus (ATCC® VR-1259™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | July 17, 2024 |
| Length | 10,984 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 1 |
| Assembly Level | Complete |
| N50 | 10,984 nt |
| %GC | 51.44% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1259™ |
| Isolation | Presumed from spinal fluid from a fatally infected 6-year-old male. |
| Biosafety Level | 3 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 3,960,606 |
| Illumina Mean Coverage Depth | 21,221.873× |
| Illumina Median Q Score | 37 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
2 out of 3 passed, 1 failed
PassedMedian Q score, all bases37
FailedPercent of median Q scores per cycle greater than 2549.01%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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