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  • Atopobium
  • Atopobium minutum

Atopobium minutum (ATCC® 33267™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedSeptember 2, 2021
Length1,748,348 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N501,748,348 nt
%GC48.71%
Organism Summary
NameATCC® 33267™
IsolationPerineal abscess
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS1,595
Number of Hypothetical Proteins715
Number of tRNA45
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count213,877
Oxford Nanopore Median Q Score24
Illumina Read Count7,329,574
Illumina Mean Coverage Depth388.903×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads7,329,574
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage388.903×
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