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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 35045™ |
| Strain Alias | DSM 567 [E100-69, NCIB 10956] |
| Isolation | Extraction juices of beet sugar factory |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 21, 2020 |
| Length | 2,789,740 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 2,704,527 nt |
| %GC | 34.53% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2727 |
| Number of Hypothetical Proteins | 260 |
| Number of tRNA | 57 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 456,609 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 18,970,295 |
| Illumina Mean Coverage Depth | 906.802× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 18,970,295 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.31% |
| Estimated genome contamination | 1.45% |
| Illumina depth of coverage | 906.802× |
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