ATCC® BAA-2476™ | Hyphomicrobium nitrativorans

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® BAA-2476™
Strain Alias	NL23
Isolation	Strain NL23 was isolated form a nitrate-removing biological reactor containing naturally occurring microorganisms treating the seawater of an aquarium located at the Montreal Biodome.
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	December 12, 2025
Length	3,654,084 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	3,654,084 nt
%GC	63.89%

Annotations Summary
Number of CDS	3363
Number of Hypothetical Proteins	603
Number of tRNA	48
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	10,494
Oxford Nanopore Median Q Score	41
Illumina Read Count	3,221,602
Illumina Mean Coverage Depth	219.053×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Microbes

0 out of 0 selected (Select All / Deselect All).

		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

Displaying Product

Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	3,221,602
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.77%
Estimated genome contamination	0.47%
Illumina depth of coverage	219.053×
ONT depth of coverage	19.938×

This bacterium was assembled, annotated, and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions