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- Streptomyces albogriseolus group
- Streptomyces albogriseolus
Streptomyces albogriseolus (ATCC® 23875™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 8,144,932 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 11 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,211,575 nt |
| %GC | 72.27% |
| Organism Summary | |
|---|---|
| Name | ATCC® 23875™ |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 7,357 |
| Number of Hypothetical Proteins | 1,179 |
| Number of tRNA | 70 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 321,369 |
| Oxford Nanopore Median Q Score | 32 |
| Illumina Read Count | 11,625,942 |
| Illumina Mean Coverage Depth | 206.715× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads11,625,942
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.08%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.66%
PassedAverage depth of coverage206.715×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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