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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 18735™ |
| Strain Alias | IGC 3410 [CBS 1898, CCRC 21492, DBVPG 6204, IFO 10230, NRRL Y-17068] |
| Isolation | Mink |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 13, 2024 |
| Length | 14,740,001 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 23 (0 Circularized) |
| N50 | 2,157,362 nt |
| %GC | 54.51% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 745 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 812,819 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 36,622,356 |
| Illumina Mean Coverage Depth | 365.581× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 36,622,356 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.2% |
| Average depth of coverage | 365.581× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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