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Purchased a product from ATCC? Enter in the lot number to download the omics data or learn more about our supporting memberships here.
Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 24235™ |
| Strain Alias | UCD 70-5 [CBS 4417, IFO 1672, NRRL Y-8282] |
| Isolation | Soil |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
Assembly Summary | |
|---|---|
| Date Published | December 12, 2022 |
| Length | 12,396,186 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 22 (0 Circularized) |
| N50 | 816,997 nt |
| %GC | 33.73% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 726 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 441,810 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 18,500,276 |
| Illumina Mean Coverage Depth | 202.748× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 18,500,276 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 89.05% |
| Average depth of coverage | 202.748× |
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