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- unclassified Marinobacter
- Marinobacter cryopegasus
Marinobacter cryopegasus (ATCC® TSD-404™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 24, 2025 |
| Length | 4,737,548 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 4,737,548 nt |
| %GC | 54.33% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-404™ |
| Isolation | Isolated from borehole CBIW in the Barrow Permafrost Tunnel in Utqiagvik, Alaska USA (71.2944°N, 156.7153°W). |
| Biosafety Level | 1 |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,414 |
| Number of Hypothetical Proteins | 465 |
| Number of tRNA | 49 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 14,895 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 8,021,824 |
| Illumina Mean Coverage Depth | 448.541× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,021,824
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.07%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.03%
PassedAverage depth of coverage448.541×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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