ATCC® TSD-404™ | Marinobacter cryopegasus

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-404™
Strain Alias	M1C
Isolation	Isolated from borehole CBIW in the Barrow Permafrost Tunnel in Utqiagvik, Alaska USA (71.2944°N, 156.7153°W).
Biosafety Level	1

Assembly Summary
Date Published	March 24, 2025
Length	4,737,548 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	4,737,548 nt
%GC	54.33%

Annotations Summary
Number of CDS	4440
Number of Hypothetical Proteins	450
Number of tRNA	49
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	14,895
Oxford Nanopore Median Q Score	35
Illumina Read Count	8,021,824
Illumina Mean Coverage Depth	448.541×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	8,021,824
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.88%
Estimated genome contamination	3.48%
Illumina depth of coverage	448.541×
ONT depth of coverage	26.164×

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions