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  • Salmonella enterica subsp. enterica
  • Salmonella enterica subsp. enterica subsp. ex

Salmonella enterica subsp. enterica subsp. ex (ATCC® 19585™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 3, 2022
Length4,950,983 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs4 (1 Circularized)
Assembly LevelChromosome
N504,857,223 nt
%GC52.24%
Organism Summary
NameATCC® 19585™
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS4,621
Number of Hypothetical Proteins1,231
Number of tRNA86
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count114,435
Oxford Nanopore Median Q Score23
Illumina Read Count18,146,225
Illumina Mean Coverage Depth509.255×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads18,146,225
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.04%
PassedAverage depth of coverage509.255×
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