ATCC® BAA-240™ | Vibrio parahaemolyticus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 3, 2023
Length	5,193,443 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
Assembly Level	Chromosome
N50	3,217,917 nt
%GC	45.34%

Organism Summary
Name	ATCC® BAA-240™
Isolation	Feces
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	4,614
Number of Hypothetical Proteins	393
Number of tRNA	120
Number of 5s rRNA	12
Number of 16s rRNA	11
Number of 23s rRNA	11

Input Reads Summary
Oxford Nanopore Read Count	176,688
Oxford Nanopore Median Q Score	14
Illumina Read Count	13,355,014
Illumina Mean Coverage Depth	379.743×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads13,355,014

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.02%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination0%

PassedAverage depth of coverage379.743×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Vibrio parahaemolyticus (ATCC® BAA-240™)