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Overview
Genome Browser
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | July 1, 2022 |
| Length | 1,799,129 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 1,799,129 nt |
| %GC | 35.93% |
| Organism Summary | |
|---|---|
| Name | ATCC® 51448™ |
| Strain Name | Hh-2 [CCUG 33637, CIP 104100, LMG 16316] |
| Isolation | SCID/NCr mouse liver |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 1812 |
| Number of Hypothetical Proteins | 363 |
| Number of tRNA | 38 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 34,327 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 20,187,885 |
| Illumina Mean Coverage Depth | 1,482.112× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads20,187,885
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.94%
PassedEstimated genome contamination0.35%
PassedAverage depth of coverage1,482.112×
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