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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Name | ATCC® 38163™ |
| Strain Name | G00 [ATCC 12996, ATCC 26451, C. Thom 5616.1, CBS 112.46, FGSC A4, Glasgow wild-type, Pontecorvo strain, IMI 38576ii, NRRL 194, SRRC 273, WB 194, Yuill A69, biA-1] |
| Genotype | argB |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2020 |
| Length | 30,310,024 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 3,468,257 nt |
| %GC | 50.05% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 755 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 880,171 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 37,538,311 |
| Illumina Mean Coverage Depth | 176.953× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads37,538,311
Median Q score, all bases37
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness98.42%
PassedAverage depth of coverage176.953×
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