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  • Achromobacter
  • Achromobacter denitrificans

Achromobacter denitrificans (ATCC® 15173™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 25, 2023
Length6,737,577 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (1 Circularized)
Assembly LevelChromosome
N503,397,880 nt
%GC67.58%
Organism Summary
NameATCC® 15173™
IsolationSoil
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS6,159
Number of Hypothetical Proteins2,367
Number of tRNA69
Number of 5s rRNA5
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count71,420
Oxford Nanopore Median Q Score24
Illumina Read Count9,880,702
Illumina Mean Coverage Depth187.905×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads9,880,702
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.53%
PassedEstimated genome contamination0.5%
PassedAverage depth of coverage187.905×
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