Organism Summary | |
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Catalog Number | ATCC® 15173™ |
Strain Alias | 12 [55 B, CCUG 407, CIP 7715, DSM 30026, ICPB 4221, IFO 15125, JCM 5490, LMG 1231, NCTC 8582] |
Isolation | Soil |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | February 25, 2023 |
Length | 6,736,760 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (1 Circularized) |
N50 | 3,397,880 nt |
%GC | 67.58% |
Annotations Summary | |
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Number of CDS | 6199 |
Number of Hypothetical Proteins | 468 |
Number of tRNA | 59 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 71,420 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 9,880,702 |
Illumina Mean Coverage Depth | 187.927× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,880,702 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.53% |
Estimated genome contamination | 0.5% |
Average depth of coverage | 187.927× |