ATCC® TSD-370™ | Legionella sheltonii

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-370™
Strain Alias	PATHC038, CCUG 76918T
Isolation	Samples were collected from a cruise ship, Marshall Island-flagged ship, with an international itinerary.
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	February 1, 2024
Length	4,309,804 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (0 Circularized)
N50	3,936,887 nt
%GC	38.85%

Annotations Summary
Number of CDS	3884
Number of Hypothetical Proteins	873
Number of tRNA	42
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	89,587
Oxford Nanopore Median Q Score	26
Illumina Read Count	12,767,022
Illumina Mean Coverage Depth	439.043×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	12,767,022
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0.86%
Illumina depth of coverage	439.043×
ONT depth of coverage	259.354×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions