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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 4,319,812 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 30 (2 Circularized) |
| N50 | 446,417 nt |
| %GC | 65.58% |
| Organism Summary | |
|---|---|
| Name | ATCC® 27294™ |
| Strain Name | TMC 102 [H37Rv] |
| Isolation | Derived from E.R. Baldwin's 1905 human-lung isolate H37 by W. Steenken |
| Tags | Type Strain |
| Biosafety Level | 3 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4057 |
| Number of Hypothetical Proteins | 436 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 21,443 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 17,919,691 |
| Illumina Mean Coverage Depth | 548.687× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads17,919,691
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.28%
PassedEstimated genome contamination0%
PassedAverage depth of coverage548.687×
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