ATCC® 25417™ | Burkholderia gladioli

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	9,281,830 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (5 Circularized)
N50	8,571,476 nt
%GC	67.36%

Annotations Summary
Number of CDS	8178
Number of Hypothetical Proteins	1115
Number of tRNA	72
Number of 5s rRNA	5
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	551,528
Oxford Nanopore Median Q Score	35
Illumina Read Count	10,419,676
Illumina Mean Coverage Depth	165.229×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,419,676
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.43%
Estimated genome contamination	2.3%
Illumina depth of coverage	165.229×
ONT depth of coverage	163.278×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions