| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 33573™ | 
| Strain Alias | VPI D1A-1A | 
| Isolation | Oral cavity | 
| Tags | Methylation DataType Strain | 
| Biosafety Level | 2 | 
| Type Strain | Yes | 
| Assembly Summary | |
|---|---|
| Date Published | April 2, 2022 | 
| Length | 3,134,641 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 16 (0 Circularized) | 
| N50 | 867,155 nt | 
| %GC | 43.93% | 
| Annotations Summary | |
|---|---|
| Number of CDS | 2520 | 
| Number of Hypothetical Proteins | 393 | 
| Number of tRNA | 57 | 
| Number of 5s rRNA | 3 | 
| Number of 16s rRNA | 1 | 
| Number of 23s rRNA | 4 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 15,943 | 
| Oxford Nanopore Median Q Score | 21 | 
| Illumina Read Count | 16,102,746 | 
| Illumina Mean Coverage Depth | 716.395× | 
| Illumina Median Q Score | 34 | 
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 16,102,746 | 
| Median Q score, all bases | 34 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.32% | 
| Estimated genome contamination | 0.34% | 
| Illumina depth of coverage | 716.395× |