Organism Summary | |
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Catalog Number | ATCC® VR-1932™ |
Isolation | Case of epidemic keratoconjunctivitis |
Biosafety Level | 2 |
Assembly Summary | |
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Date Published | April 29, 2024 |
Length | 35,316 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (0 Circularized) |
Assembly Level | Complete |
N50 | 35,316 nt |
%GC | 54.55% |
Annotations Summary |
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Input Reads Summary | |
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Oxford Nanopore Read Count | 39,442 |
Oxford Nanopore Median Q Score | 28 |
Illumina Read Count | 16,609,984 |
Illumina Mean Coverage Depth | 6,693.163× |
Illumina Median Q Score | 34 |
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions