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  • Vibrio campbellii

Vibrio campbellii (ATCC® 700104™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 1, 2022
Length5,983,256 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (All Circularized)
Assembly LevelComplete
N503,778,506 nt
%GC45.44%
Organism Summary
NameATCC® 700104™
GenotypeluxA::Tn5lac
IsolationMutant derived from BB120 (ATCC BAA-1116)
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS5,515
Number of Hypothetical Proteins2,442
Number of tRNA131
Number of 5s rRNA13
Number of 16s rRNA12
Number of 23s rRNA12
Input Reads Summary
Oxford Nanopore Read Count671,385
Oxford Nanopore Median Q Score24
Illumina Read Count17,228,118
Illumina Mean Coverage Depth401.556×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads17,228,118
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage401.556×
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